find signal

Given some regions and point_regions, find the regions that actually should contain real data. See details for an explanation of what is considered real.

Usage

find_signal_regions(
  regions,
  point_regions_list,
  region_percentile = 0.99,
  multiplier = 1.5,
  n_point_region = 2000
)

Arguments

regions

the regions we want to query

point_regions_list

the individual points

region_percentile

the cumulative percentile cutoff to use

multiplier

how much above base quantiles to use (default = 1.5)

n_point_region

how many points make up a large segment to do percentile on?

Value

IRanges