get mzml metadata

When raw files are copied, we also generated metadata about their original locations and new locations, and some other useful info. We would like to capture it, and keep it along with the metadata from the mzml file. So, given a list of mzml files, and a location for the raw files, this function creates metadata json files for the mzml files.

Usage

raw_metadata_mzml(mzml_files, raw_file_loc, recursive = TRUE)

Arguments

mzml_files

the paths to the mzml files

raw_file_loc

the directory holding raw files and json metadata files

recursive

should we go recursively down the directories or not (default = TRUE)