Single Pass Normalization

Does a single pass of normalizing scans to each other.

Usage

single_pass_normalization(
  scan_peaks,
  intensity_measure = c("RawHeight", "Height"),
  summary_function = median,
  use_peaks = NULL,
  min_ratio = 0.7
)

Arguments

scan_peaks

the scan peaks to normalize

intensity_measure

which intensities to normalize

summary_function

which function to use to calculate summaries (median)

use_peaks

which peaks to use for normalization

min_ratio

what ratio of maximum intensity of peaks should we use for normalization

Value

scan_peaks list