Create JPred REST interface parameters.

Source: R/api.R

Create a string with JPred parameters for job submission.

create_jpred_query(rest_format, file = NULL, seq = NULL, skipPDB = TRUE,
  email = NULL, name = NULL, silent = FALSE)

Arguments

rest_format

Format for JPred REST interface.
file

File path to a file with the job input (sequence or msa).
seq

Alternatively, amino acid sequence passed as string of single-letter code without spaces, e.g. --seq=ATWFGTHY
skipPDB

Should the PDB query be skipped? (default = TRUE)
email

For a batch job submission, where to send the results?
name

A name for the job.
silent

Should the work be done silently? (default = FALSE)

Value

Formatted string with JPred parameters.