Welcome to MDH’s documentation!

Contents:

• User Guide
  • Description
  • Installation
  • Get the source code
  • Dependencies
  • Data
  • Basic usage
• The md_harmonize Tutorial
  • The md_harmonize API tutorial
• The md_harmonize API Reference
  • md_harmonize.compound
  • Atom
  • Bond
  • Compound
  • md_harmonize.reaction
  • Reaction
  • md_harmonize.KEGG_database_scraper
  • entry_list()
  • update_entity()
  • curate_molfile()
  • download()
  • md_harmonize.KEGG_parser
  • kegg_data_parser()
  • parse_equation()
  • kegg_kcf_parser()
  • reaction_center
  • RpairParser
  • create_compound_kcf()
  • create_reactions()
  • compound_pair_mappings()
  • create_atom_mappings()
  • md_harmonize.MetaCyc_parser
  • reaction_side_parser()
  • generate_one_to_one_mappings()
  • atom_mappings_parser()
  • reaction_parser()
  • create_reactions()
  • md_harmonize.aromatics
  • AromaticManager
  • md_harmonize.harmonization
  • HarmonizedEdge
  • HarmonizedCompoundEdge
  • HarmonizedReactionEdge
  • HarmonizationManager
  • CompoundHarmonizationManager
  • ReactionHarmonizationManager
  • harmonize_compound_list()
  • harmonize_reaction_list()
• License

Indices and tables

• Index

• Module Index

• Search Page