A cc_graph class is a graphNEL with the added slot of
significant, a matrix of rows (nodes / annotations) and whether
they were found to be significant in a given enrichment (columns). This
matrix is used for classifying the annotations into different groups, and
generating either pie-charts or coloring the nodes in a visualization.
constructs a cc_graph given a graphNEL and a significant matrix.
Usage
cc_graph(graph, significant)
# S4 method for class 'cc_graph'
show(object)
cc_graph(graph, significant)Arguments
- graph
the
graphNEL- significant
a matrix indicating which nodes are significant in which experiment
- object
the cc_graph to show