the enriched results class — enriched_result-class • categoryCompare2

given all the slots for an enriched_result, checks that all the data is self-consistent, and creates the enriched_result object.

Usage

hypergeometric_result(features, universe, annotation, statistics)

# S4 method for class 'enriched_result'
show(object)

hypergeometric_result(features, universe, annotation, statistics)

# S4 method for class 'binomial_result'
show(object)

Arguments

features: the features that were differentially expressed (see details)
universe: all of the features that were measured
annotation: an annotation object
statistics: a statistical_results object
object: the binomial_result object to show

Value

hypergeometric_result

Slots

annotation: list giving the annotation to feature relationship
statistics: a statistical_results object
features: the significant features
universe: the universe of features
ranks: the ranked features
positivefc: the positive log-fold-changed genes, a vector of class ANY
negativefc: the negative log-fold-changed genes