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given all the slots for an enriched_result, checks that all the data is self-consistent, and creates the enriched_result object.

Usage

hypergeometric_result(features, universe, annotation, statistics)

# S4 method for class 'enriched_result'
show(object)

hypergeometric_result(features, universe, annotation, statistics)

# S4 method for class 'binomial_result'
show(object)

Arguments

features

the features that were differentially expressed (see details)

universe

all of the features that were measured

annotation

an annotation object

statistics

a statistical_results object

object

the binomial_result object to show

Value

hypergeometric_result

Slots

annotation

list giving the annotation to feature relationship

statistics

a statistical_results object

features

the significant features

universe

the universe of features

ranks

the ranked features

positivefc

the positive log-fold-changed genes, a vector of class ANY

negativefc

the negative log-fold-changed genes