given all the slots for an enriched_result
, checks that all
the data is self-consistent, and creates the enriched_result
object.
Usage
hypergeometric_result(features, universe, annotation, statistics)
# S4 method for class 'enriched_result'
show(object)
hypergeometric_result(features, universe, annotation, statistics)
# S4 method for class 'binomial_result'
show(object)
Arguments
- features
the features that were differentially expressed (see details)
- universe
all of the features that were measured
- annotation
an
annotation
object- statistics
a
statistical_results
object- object
the binomial_result object to show
Slots
annotation
list giving the annotation to feature relationship
statistics
a
statistical_results
objectfeatures
the significant features
universe
the universe of features
ranks
the ranked features
positivefc
the positive log-fold-changed genes, a vector of class ANY
negativefc
the negative log-fold-changed genes