Transforms a gocats ancestors JSON list to a GO annotation object.
Usage
gocats_to_annotation(
ancestors_file = "ancestors.json",
namespace_file = "namespace.json",
annotation_type = "gocatsGO",
feature_type = "Uniprot",
feature_translation = NULL,
feature_min = 5,
feature_max = 5000
)Arguments
- ancestors_file
the ancestors.json file from gocats (required)
- namespace_file
the namespace.json file from gocats (optional)
- annotation_type
what annotations are we making? (gocatsGO by default)
- feature_type
what type of features are we using (assume Uniprot)
- feature_translation
a data.frame used to convert the feature IDs
- feature_min
minimum number of features annotated (default: 5)
- feature_max
maximum number of features annotated (default: 5000)