do hypergeometric enrichment

Usage

hypergeometric_feature_enrichment(
  hypergeometric_features,
  direction = "over",
  p_adjust = "BH",
  min_features = 1
)

Arguments

hypergeometric_features: a hypergeometric_features object
direction: which direction to do the enrichment (over or under)
p_adjust: how to correct the p-values (default is "BH")
min_features: how many features should be annotated before testing it?

Value

enriched_result

Details

The min_features argument here applies to the minumum number of features an annotation has from the universe of features supplied, not the minumum number of features from the differential list. For more about the p-value adjustment, see stats::p.adjust