Holds all the peak region data

Details

This reference class represents the peak region data.

frequency_point_regions: the frequency data
frequency_fit_description: the model of frequency ~ m/z
mz_fit_description: the model of m/z ~ frequency
peak_regions: the peak regions
sliding_regions: the sliding regions used for density calculations
tiled_regions: the tiled regions used for grouping and splitting peak regions
peak_region_list: list of regions
frequency_multiplier: how much to multiplier frequency by to make interval points
scan_peaks: the peaks by scans
peak_data: the data.frame of final peak data
scan_level_arrays: scan level peak data as matrices
is_normalized: are the peak intensities normalized
normalization_factors: the normalization factors calculated
n_scan: how many scans are we working with
scans_per_peak: ??
scan_perc: what percentage of scans is a minimum
min_scan: based on scan_perc, how many scans minimum does a peak need to be in
max_subsets: ??
scan_subsets: ??
frequency_range: what is the range in frequency space
scan_correlation: ??
keep_peaks: which peaks are we keeping out of all the peaks we had
peak_index: the indices for the peaks
scan_indices: the names of the scans
instrument: the instrument serial number if available

sets the minimum number of scans to use

SCPeakRegions$set_min_scan()

Adds the data from an SCMzml object to the SCPeakRegion.

SCPeakRegions$add_data(sc_mzml)

Creates a new SCPeakRegions object

SCPeakRegions$new(
  sc_mzml = NULL,
  frequency_multiplier = 400,
  scan_perc = 0.1,
  max_subsets = 100
)

The objects of this class are cloneable with this method.

SCPeakRegions$clone(deep = FALSE)