Index

A

academic_tracker module academic_tracker.athr_srch_emails_and_reports module academic_tracker.athr_srch_modularized module academic_tracker.athr_srch_webio module academic_tracker.citation_parsing module academic_tracker.emails_and_reports_helpers module academic_tracker.fileio module

academic_tracker.helper_functions module academic_tracker.ref_srch_emails_and_reports module academic_tracker.ref_srch_modularized module academic_tracker.ref_srch_webio module academic_tracker.user_input_checking module academic_tracker.webio module adjust_author_attributes() (in module academic_tracker.helper_functions) are_citations_in_pub_dict() (in module academic_tracker.helper_functions)

B

build_author_loop() (in module academic_tracker.athr_srch_emails_and_reports) build_pub_dict_from_PMID() (in module academic_tracker.ref_srch_webio)

build_publication_dict() (in module academic_tracker.athr_srch_modularized) (in module academic_tracker.ref_srch_modularized)

C

clean_tags_from_url() (in module academic_tracker.webio) cli_inputs_check() (in module academic_tracker.user_input_checking) config_file_check() (in module academic_tracker.user_input_checking) config_report_check() (in module academic_tracker.user_input_checking) convert_tokenized_authors_to_str() (in module academic_tracker.ref_srch_emails_and_reports) create_authors_by_project_dict() (in module academic_tracker.helper_functions) create_collaborator_report() (in module academic_tracker.athr_srch_emails_and_reports) create_collaborators_reports_and_emails() (in module academic_tracker.athr_srch_emails_and_reports) create_project_report() (in module academic_tracker.athr_srch_emails_and_reports) create_project_reports_and_emails() (in module academic_tracker.athr_srch_emails_and_reports)

create_pub_dict_for_saving_Crossref() (in module academic_tracker.helper_functions) create_pub_dict_for_saving_PubMed() (in module academic_tracker.helper_functions) create_pubs_by_author_dict() (in module academic_tracker.athr_srch_emails_and_reports) create_report_from_template() (in module academic_tracker.ref_srch_emails_and_reports) create_summary_report() (in module academic_tracker.athr_srch_emails_and_reports) create_tabular_collaborator_report() (in module academic_tracker.athr_srch_emails_and_reports) create_tabular_project_report() (in module academic_tracker.athr_srch_emails_and_reports) create_tabular_report() (in module academic_tracker.ref_srch_emails_and_reports) create_tabular_summary_report() (in module academic_tracker.athr_srch_emails_and_reports) create_tokenization_report() (in module academic_tracker.ref_srch_emails_and_reports)

D

do_strings_fuzzy_match() (in module academic_tracker.helper_functions)

E

extract_ORCID_from_string() (in module academic_tracker.helper_functions)

F

find_common_subphrases() (in module academic_tracker.helper_functions)

find_duplicate_citations() (in module academic_tracker.helper_functions) fuzzy_matches_to_list() (in module academic_tracker.helper_functions)

G

generate_internal_data_and_check_authors() (in module academic_tracker.athr_srch_modularized) get_DOI_from_Crossref() (in module academic_tracker.webio)

get_pub_id_in_publication_dict() (in module academic_tracker.helper_functions) get_url_contents_as_str() (in module academic_tracker.webio)

I

input_reading_and_checking() (in module academic_tracker.athr_srch_modularized) (in module academic_tracker.ref_srch_modularized)

is_fuzzy_match_to_list() (in module academic_tracker.helper_functions) is_pub_in_publication_dict() (in module academic_tracker.helper_functions)

L

load_json() (in module academic_tracker.fileio)

M

match_authors_in_prev_pub() (in module academic_tracker.helper_functions) match_pub_authors_to_citation_authors() (in module academic_tracker.helper_functions) match_pub_authors_to_config_authors() (in module academic_tracker.helper_functions) module academic_tracker academic_tracker.athr_srch_emails_and_reports academic_tracker.athr_srch_modularized academic_tracker.athr_srch_webio academic_tracker.citation_parsing academic_tracker.emails_and_reports_helpers academic_tracker.fileio academic_tracker.helper_functions academic_tracker.ref_srch_emails_and_reports academic_tracker.ref_srch_modularized academic_tracker.ref_srch_webio academic_tracker.user_input_checking academic_tracker.webio

N

normalize_DOI() (in module academic_tracker.helper_functions)

P

parse_MEDLINE_format() (in module academic_tracker.citation_parsing) parse_myncbi_citations() (in module academic_tracker.ref_srch_webio)

parse_text_for_citations() (in module academic_tracker.citation_parsing) prev_pubs_file_check() (in module academic_tracker.user_input_checking)

R

read_csv() (in module academic_tracker.fileio) read_previous_publications() (in module academic_tracker.fileio) read_text_from_docx() (in module academic_tracker.fileio) read_text_from_txt() (in module academic_tracker.fileio)

ref_config_file_check() (in module academic_tracker.user_input_checking) regex_group_return() (in module academic_tracker.helper_functions) regex_match_return() (in module academic_tracker.helper_functions) regex_search_return() (in module academic_tracker.helper_functions)

S

save_and_send_reports_and_emails() (in module academic_tracker.athr_srch_modularized) (in module academic_tracker.ref_srch_modularized) save_emails_to_file() (in module academic_tracker.fileio) save_json_to_file() (in module academic_tracker.fileio) save_publications_to_file() (in module academic_tracker.fileio) save_string_to_file() (in module academic_tracker.fileio) search_Crossref_for_pubs() (in module academic_tracker.athr_srch_webio)

search_Google_Scholar_for_ids() (in module academic_tracker.webio) search_Google_Scholar_for_pubs() (in module academic_tracker.athr_srch_webio) search_ORCID_for_ids() (in module academic_tracker.webio) search_ORCID_for_pubs() (in module academic_tracker.athr_srch_webio) search_PubMed_for_pubs() (in module academic_tracker.athr_srch_webio) search_references_on_source() (in module academic_tracker.ref_srch_webio) send_emails() (in module academic_tracker.webio)

T

tok_reference_check() (in module academic_tracker.user_input_checking) tokenize_APA_or_Harvard_authors() (in module academic_tracker.citation_parsing) tokenize_MLA_or_Chicago_authors() (in module academic_tracker.citation_parsing)

tokenize_myncbi_citations() (in module academic_tracker.citation_parsing) tokenize_reference_input() (in module academic_tracker.ref_srch_webio) tokenize_Vancouver_authors() (in module academic_tracker.citation_parsing) tracker_validate() (in module academic_tracker.user_input_checking)

V

vprint() (in module academic_tracker.helper_functions)