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generate annotation graph

Source: R/all_generics.R, R/combine_enrichments.R
generate_annotation_graph.Rd

given a combined_enrichment, generate the annotation similarity graph

Usage

generate_annotation_graph(
  comb_enrichment,
  annotation_similarity = "combined",
  low_cut = 5,
  hi_cut = 500
)

# S4 method for class 'combined_enrichment'
generate_annotation_graph(
  comb_enrichment,
  annotation_similarity = "combined",
  low_cut = 5,
  hi_cut = 500
)

Arguments

comb_enrichment

the combined_enrichment object

annotation_similarity

which similarity measure to use

low_cut

keep only those annotations in the graph with at least this many annotated features

hi_cut

keep only those annotations with less than this many annotated features

Value

cc_graph