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generate statistical table

Source: R/all_generics.R, R/combine_enrichments.R
generate_table.Rd

given a combined_enrichment object, get out the data.frame either for investigation or to add data to the cc_graph.

Usage

generate_table(comb_enrichment, entries = "signficant", link_type = "explicit")

# S4 method for class 'combined_enrichment'
generate_table(
  comb_enrichment,
  entries = "significant",
  link_type = "explicit"
)

Arguments

comb_enrichment

the combined_enrichment object

entries

which entries to return, "significant" or "all"

should their be an "explicit" link (see details)

Value

data.frame

Details

the link_type controls whether to create an "explicit" link that is actually a column in the data.frame, or create an "implicit" html link that is part of the @name column in the returned data.frame. Useful if you are embedding the data.frame in an html report.