significant annotations

The significant_annotations class holds which annotations from which enrichment were both measured and significant. Each of these slots is a logical matrix with rows named by annotation_id and columns named by the names of the enriched_result that was combined.

Makes a new significant_annotation while checking that everything is valid.

Usage

significant_annotations(significant, measured, sig_calls = NULL)

significant_annotations(significant, measured, sig_calls = NULL)

Arguments

significant

logical matrix of annotations (rows) and experiments (columns)

measured

logical matrix of annotations (rows) and experiments (columns)

sig_calls

character vector of deparsed calls that resulted in signficant and measured

Slots

significant

logical matrix

measured

logical matrix

sig_calls

character representations of calls used to filter the data