Index

A

add_protocols_to_PDS() (in module messes.validate.validate) addColumnOperand() (messes.extract.extract.RecordMaker method) addField() (messes.extract.extract.RecordMaker method)

addGlobalField() (messes.extract.extract.RecordMaker method) addLiteralOperand() (messes.extract.extract.RecordMaker method) addVariableOperand() (messes.extract.extract.RecordMaker method)

B

build_PD_schema() (in module messes.validate.validate)

C

check() (in module messes.validate.validate) child() (messes.extract.extract.RecordMaker static method) columnName() (messes.extract.extract.TagParserError static method) ColumnOperand (class in messes.extract.extract) compare() (messes.extract.extract.TagParser method) compute_matrix_value() (in module messes.convert.convert) compute_string_value() (in module messes.convert.convert)

convert_formats() (in module messes.validate.validate) create() (messes.extract.extract.FieldMaker method) (messes.extract.extract.ListFieldMaker method) (messes.extract.extract.RecordMaker method) create_sample_lineages() (in module messes.convert.mwtab_functions) create_subject_sample_factors() (in module messes.convert.mwtab_functions) create_validator() (in module messes.validate.validate)

D

deleteMetadata() (messes.extract.extract.TagParser method)

directives_to_table() (in module messes.convert.convert)

E

evaluate() (messes.extract.extract.Evaluator method)

Evaluator (class in messes.extract.extract)

F

factors_checks() (in module messes.validate.validate) field() (messes.extract.extract.RecordMaker method)

FieldMaker (class in messes.extract.extract) findParent() (messes.extract.extract.TagParser method)

G

generateLineages() (messes.extract.extract.TagParser method)

H

handle_code_field() (in module messes.convert.convert) hasField() (messes.extract.extract.RecordMaker method) hasFileExtension() (messes.extract.extract.TagParser static method)

hasRequiredFields() (messes.extract.extract.Evaluator method) hasShortField() (messes.extract.extract.RecordMaker method) hasValidID() (messes.extract.extract.RecordMaker method)

I

id_check() (in module messes.validate.validate) indexes_of_duplicates_in_list() (in module messes.validate.validate) isComparable() (messes.extract.extract.TagParser static method) isEvalString() (messes.extract.extract.Evaluator static method)

isGoogleSheetsFile() (messes.extract.extract.TagParser static method) isInvalidDuplicateField() (messes.extract.extract.RecordMaker method) isLastField() (messes.extract.extract.RecordMaker method) iterate_string_or_list() (in module messes.validate.validate)

L

ListFieldMaker (class in messes.extract.extract)

LiteralOperand (class in messes.extract.extract) loadSheet() (messes.extract.extract.TagParser static method)

M

measurement_protocol_check() (in module messes.validate.validate) merge() (messes.extract.extract.TagParser method) messes module messes.convert.convert module messes.convert.mwtab_functions module messes.convert.user_input_checking module messes.extract.extract module

messes.validate.validate module modify() (messes.extract.extract.TagParser method) module messes messes.convert.convert messes.convert.mwtab_functions messes.convert.user_input_checking messes.extract.extract messes.validate.validate mwtab_checks() (in module messes.validate.validate)

O

Operand (class in messes.extract.extract)

P

parseSheet() (messes.extract.extract.TagParser method) print_better_error_messages() (in module messes.validate.validate) printLineages() (messes.extract.extract.TagParser static method)

properField() (messes.extract.extract.RecordMaker method) protocol_all_used_check() (in module messes.validate.validate) protocol_description_check() (in module messes.validate.validate)

R

read_and_validate_PDS() (in module messes.validate.validate) read_in_JSON_file() (in module messes.validate.validate) read_json_or_tabular_file() (in module messes.validate.validate) readDirectives() (messes.extract.extract.TagParser method) readMetadata() (messes.extract.extract.TagParser method) RecordMaker (class in messes.extract.extract)

run_conversion_directives_to_json_schema_command() (in module messes.validate.validate) run_json_command() (in module messes.validate.validate) run_pds_command() (in module messes.validate.validate) run_pds_to_json_command() (in module messes.validate.validate) run_pds_to_table_command() (in module messes.validate.validate) run_save_schema_command() (in module messes.validate.validate) run_schema_command() (in module messes.validate.validate)

S

save_out_JSON_file() (in module messes.validate.validate) saveSheet() (messes.extract.extract.TagParser method) shallowClone() (messes.extract.extract.FieldMaker method) (messes.extract.extract.ListFieldMaker method)

shortField() (messes.extract.extract.RecordMaker method) SS_protocol_check() (in module messes.validate.validate)

T

TagParser (class in messes.extract.extract)

TagParserError tagSheet() (messes.extract.extract.TagParser method)

U

update() (in module messes.convert.convert)

V

validate_conversion_directives() (in module messes.convert.user_input_checking) validate_JSON_schema() (in module messes.validate.validate)

validate_parent_id() (in module messes.validate.validate) validate_PDS_parent_protocols() (in module messes.validate.validate) VariableOperand (class in messes.extract.extract)

X

xstr() (in module messes.extract.extract)