cluster and reorder — similarity_reorder • visualizationQualityControl

given a matrix (maybe a distance matrix), cluster and then re-order using dendsort::dendsort().

Usage

similarity_reorder(
  similarity_matrix,
  matrix_indices = NULL,
  transform = "none",
  hclust_method = "complete",
  dendsort_type = "min"
)

Arguments

similarity_matrix: matrix of similarities
matrix_indices: indices to reorder
transform: should a transformation be applied to the data first
hclust_method: which method for clustering should be used?
dendsort_type: how should the reordering be done? (default is "min")

Value

a stats::dendrogram() object. To get the order use order.dendogram.