Function reference • visualizationQualityControl

All functions

calc_sd_rsd(): calculate values from summaries

calc_sd_rsd_nls(): calculate values from summaries v2

calculate_fratio(): calculate F-ratio

count_matching_features(): matching features

determine_outliers(): determine outliers

filter_non_zero_percentage(): keep features with percentage of non-zeros

generate_group_colors(): create set of disjoint colors

grp_cor: 10 sample to sample correlations

grp_cor_data: grp_cor_data

grp_exp_data: grp_exp_data

grp_info: 10 sample meta-data

keep_non_missing_percentage(): keep features with percentage of non-missing

keep_non_zero_percentage(): keep features with percentage of non-zeros

median_class_correlations(): calculate median class correlations

median_correlations(): calculate median correlations

outlier_fraction(): fraction of outliers

similarity_reorder(): cluster and reorder

similarity_reorderbyclass(): reorder by sample class

split_groups(): split groups

summarize_data(): summarize data

visqc_cor_pca_scores(): correlate scores and outcome

visqc_heatmap(): easier heatmaps

visqc_score_contributions(): calculate pca contributions

visqc_test_pca_loadings(): test loadings

visqc_test_pca_scores(): test scores and outcome