summarize data

summarizes a matrix or data.frame, where columns are samples and rows are features

Usage

summarize_data(
  in_data,
  sample_classes = NULL,
  avg_function = mean,
  log_transform = FALSE,
  remove_missing = NA
)

Arguments

in_data

matrix or data.frame

sample_classes

which samples are in which class

avg_function

which function to use for summary

log_transform

apply a log-transform to the mean

remove_missing

remove missing values before summarizing

Value

data.frame